PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36596.13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 236aa    MW: 27155.8 Da    PI: 9.0252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36596.13genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-082148126
                   --S---SGGGGTS..--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                   +k ++C  ++r+   tC++G  C+F+H+
  MLOC_36596.13 21 WKSAICGEYMRSRfkTCSHGVACNFIHC 48
                   7999***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018481.2E-8226IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.3142050IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-62148IPR000571Zinc finger, CCCH-type
PRINTSPR018481.2E-84052IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNGRYFAGKQ ITCEFVALTK WKSAICGEYM RSRFKTCSHG VACNFIHCFR NPGGDYEWAD  60
WDNPPPKYWT RKMAALFGPS DDAVFDKASD APDFERLHSS DRKRLRSSDG RYISSRHRDG  120
DAHKRHSSRV FSHSKQEQSN YIMKYGHTRH SREPSTAKKQ RGHEIEDDIG RYCSPVENER  180
VSQTHKREEK HRDGHGDGAR GDNGKIKSRK HRSEQHESLE SGCSDWPSEF ADAGTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618180.0AK361818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1150D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572619.11e-116PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ6YVX96e-95C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLM0VRA51e-177M0VRA5_HORVD; Uncharacterized protein
STRINGMLOC_36596.91e-174(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-43C3H family protein